湖北农业科学 ›› 2024, Vol. 63 ›› Issue (6): 218-222.doi: 10.14088/j.cnki.issn0439-8114.2024.06.036

• 生物工程 • 上一篇    下一篇

水禽细小病毒SYBR Green I荧光定量PCR检测方法的建立与应用

汪宏才1,2, 商雨1,2, 马瑶1a, 曾哲1,2, 张蓉蓉1,2, 姚伦1,2, 罗玲1,2, 李丽1a, 温国元1,2, 罗青平1,2   

  1. 1.湖北省农业科学院,a.畜牧兽医研究所;b.农业农村部畜禽细菌病防治制剂创制重点实验室;c.畜禽病原微生物学湖北重点实验室,武汉 430064;
    2.湖北洪山实验室,武汉 430070
  • 收稿日期:2023-06-26 出版日期:2024-06-25 发布日期:2024-06-26
  • 通讯作者: 温国元(1980-),男,山西祁县人,研究员,博士,主要从事预防兽医学研究,(电话)027-87284950(电子信箱)wgy_524@163.com。
  • 作者简介:汪宏才(1971-),男,安徽桐城人,副研究员,主要从事预防兽医学研究,(电话)027-87284950(电子信箱)whcemail@163.com。
  • 基金资助:
    湖北省产业链项目(2022HSZD005); 湖北省农业科技创新中心项目(2021-620-000-001-17)

Establishment and application of a SYBR Green I fluorescence quantitative PCR detection method for waterfowl parvoviruses

WANG Hong-cai1,2, SHANG Yu1,2, MA Yao1a, ZENG Zhe1,2, ZHANG Rong-rong1,2, YAO Lun1,2, LUO Ling1,2, Li Li1a, WEN Guo-yuan1,2, LUO Qing-ping1,2   

  1. 1a. Institute of Animal Husbandry and Veterinary; 1b. Key Laboratory of Animal Bacterial Disease Prevention and Control Formulations of the Ministry of Agriculture and Rural Affairs; 1c.Hubei Key Laboratory of Pathogenic Microbiology of Livestock and Poultry, Hubei Academy of Agricultural Sciences ,Wuhan 430064, China;
    2. Hubei Hongshan Laboratory,Wuhan 430070, China
  • Received:2023-06-26 Published:2024-06-25 Online:2024-06-26

摘要: 为了建立水禽细小病毒(WPV)快速检测方法,根据序列比对结果在水禽细小病毒NS基因SF3保守区域内设计特异性引物,建立SYBR Green I荧光定量PCR通用检测方法。该方法的扩增效率(E)为90.0%,相关系数(R2)=0.99,标准曲线方程为y=-3.607x+38.77;除WPV出现S形扩增曲线外,新城疫病毒(NDV)、H9亚型禽流感病毒(H9 AIV)、鸭坦布苏病毒(DTMUV)、鸭肝炎病毒(DHAV)、鸭肠炎病毒(DEV)、鸭呼肠孤病毒(DRV)样品均未出现S形阳性扩增曲线;批内变异系数(CV)为0.15%~0.23%,批间变异系数为0.09%~0.28%。结果表明,SYBR Green I荧光定量PCR检测方法重复性好、灵敏度高和特异性强。临床样品检测结果表明,SYBR Green I荧光定量PCR与普通PCR的符合率达98.4%,灵敏度是普通PCR的1 000倍。SYBR Green I荧光定量PCR检测方法不仅能定性检测WPV,还可以进行定量检测,可用于种鸭场、种鹅场的WPV净化检测,也可用于WPV临床大量样品的快速检测。

关键词: 水禽细小病毒, 检测方法, SYBR Green I, 荧光定量PCR

Abstract: In order to establish a rapid detection method for waterfowl parvoviruses (WPV), specific primers were designed within the conserved SF3 region of the NS gene of waterfowl parvoviruses based on sequence alignment results, and a SYBR Green I fluorescence quantitative PCR universal detection method was established. The amplification efficiency (E) of this method was 90.0%, the correlation coefficient (R2) was 0.99, and the standard curve equation was y=-3.607x+38.77;except for WPV with an S-shaped amplification curve, the newcastle disease virus (NDV), H9 subtype avian influenza virus (H9 AIV), duck tembusu virus (DTMUV), duck hepatitis A virus (DHAV), duck enteritis virus (DEV), and duck reovirus (DRV) samples did not show an S-shaped positive amplification curve;the coefficient of variation (CV) within a batch was 0.15% to 0.23%, and the coefficient of variation between batches was 0.09% to 0.28%. The results indicated that the SYBR Green I fluorescence quantitative PCR detection method had good repeatability, high sensitivity, and strong specificity. The clinical sample testing results showed that the coincidence rate between SYBR Green I fluorescence quantitative PCR and conventional PCR was 98.4%, and the sensitivity was 1 000 times higher than that of conventional PCR. The SYBR Green I fluorescence quantitative PCR detection method could not only qualitatively detect WPV, but also quantitatively detect it. It could be used for WPV purification detection in duck and goose breeding farms, as well as for rapid detection of WPV in large clinical samples.

Key words: waterfowl parvoviruses, detection method, SYBR Green I, fluorescence quantitative PCR

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