[1] WILKINS M R,SANCHEZ J C,GOOLEY A A,et al.Progress with proteome projects:Why all proteins expressed by a genome should be identified and how to do it[J]. Biotechnology & genetic engineering reviews,1996,13:19-50. [2] PANDEY A,MANN M.Proteomics to study genes and genomes[J].Nature,2000,405(6788):837-846. [3] SCHMIDT F,DONAHOE S,HAGENS K,et al.Complementary analysis of the mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope-coded affinity tag technology[J].Molecular & cellular proteomics,2004,3(1):24-42. [4] DAYON L,HAINARD A, LICKER V,et al.Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags[J]. Analytical chemistry,2008,80(8): 2921-2931. [5] ROSS P L,HUANG Y N,MARCHESE J N,et al.Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents[J]. Molecular & cellular proteomics,2005,3(12):1154-1169. [6] FROST D C,GREER T,LI L.High-resolution enabled 12-plex DiLeu isobaric tags for quantitative proteomics[J]. Analytical chemistry,2015,87(3):1646-1654. [7] GARCIA-CALVO M,PETERSON E P,RASPER D M,et al.Purification and catalytic properties of human caspase family members[J]. Cell death and differentiation,1999,6(4):362-369. [8] ARYAL U K,XIONG Y,MCBRIDE Z,et al.A proteomic strategy for global analysis of plant protein complexes[J]. The plant cell,2014,26(10):3867-3882. [9] HAGE D S,ANGUIZOLA J A,BI C,et al.Pharmaceutical and biomedical applications of affinity chromatography:Recent trends and developments[J]. Journal of pharmaceutical and biomedical analysis,2012,69:93-105. [10] KUMAR A,SRIVASTAVA N C,SINGH V P,et al.Electrophoretic analysis of indian isolates of Mycoplasma agalactiae and Mycoplasma bovis by SDS-PAGE and immunoblotting[J]. Veterinary medicine international,2014,2014:892421. [11] ISLAM N,LONSDALE M,UPADHYAYA N M,et al.Protein extraction from mature rice leaves for two-dimensional gel electrophoresis and its application in proteome analysis[J]. Proteomics,2004,4(7):1903-1908. [12] MAROUGA R,DAVID S,HAWKINS E.The development of the DIGE system:2D fluorescence difference gel analysis technology[J]. Analytical and bioanalytical chemistry,2005,382(3):669-678. [13] PETRICKA J J,SCHAUER M A,MEGRAW M,et al.The protein expression landscape of the Arabidopsis root[J]. Proceedings of the national academy of sciences of the United States of America,2012,109(18):6811-6818. [14] LAN P,LI W,LIN W D,et al.Mapping gene activity of Arabidopsis root hairs[J]. Genome biology,2013,14(6):67. [15] MARTIN L B,SHERWOOD R W,NICKLAY J J,et al.Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor[J]. Proteomics,2016,16(15-16):2081-2094. [16] MATA C I,FABRE B,HERTOG M L,et al. In-depth characterization of the tomato fruit pericarp proteome[J]. Proteomics,2017,1-2:1600406. [17] ZHANG M,KOH J,LIU L,et al.Critical role of COI1-dependent jasmonate pathway in AAL toxin induced PCD in tomato revealed by comparative proteomics[J]. Scientific reports,2016,6:28451. [18] RAO R S,SALVATO F,THAL B,et al.The proteome of higher plant mitochondria[J]. Mitochondrion,2017,33:22-37. [19] SALVATO F,HAVELUND J F,CHEN M,et al.The potato tuber mitochondrial proteome[J]. Plant physiology,2014,164(2):637-653. [20] ZIMORSKI V,KU C,MARTIN W F,et al.Endosymbiotic theory for organelle origins[J]. Current opinion in microbiology,2014,22:38-48. [21] YADAV K N,SEMCHONOK D A,NOSEK L,et al.Supercomplexes of plant photosystem I with cytochrome b6f,light-harvesting complex II and NDH[J]. Biochimica et biophysica acta bioenergetics,2017,1858(1):12-20. [22] LANDE N V,SUBBA P,BARUA P,et al.Dissecting the chloroplast proteome of chickpea (Cicer arietinum L.) provides new insights into classical and non-classical functions[J]. Journal of proteomics,2017,165:11-20. [23] UBEREGUI E,HALL M,LORENZO O,et al.An Arabidopsis soluble chloroplast proteomic analysis reveals the participation of the executer pathway in response to increased light conditions[J]. Journal of experimental botany,2015,66(7):2067-2077. [24] PARSONS H T,CHRISTIANSEN K,KNIERIM B,et al.Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis[J].Plant physiology,2012,159(1):12-26. [25] ZHOU L,CHEN F,PAN H,et al.Identifying virulence-associated genes using transcriptomic and proteomic association analyses of the plant parasitic nematode Bursaphelenchus mucronatus[J]. International journal of molecular sciences,2016,17(9):1492. [26] FANG X,CHEN J,DAI L,et al.Proteomic dissection of plant responses to various pathogens[J]. Proteomics,2015,15(9):1525-1543. [27] ASANO T,KIMURA M,NISHIUCHI T.The defense response in Arabidopsis thaliana against Fusarium sporotrichioides[J]. Proteome science,2012,10(1): 61. [28] FANG X P,CHEN W Y,XIN Y,et al.Proteomic analysis of strawberry leaves infected with Colletotrichum fragariae[J]. Journal of proteomics,2012,75(13):4074-4090. [29] PARKER J,KOH J,YOO M J,et al.Quantitative proteomics of tomato defense against Pseudomonas syringae infection[J]. Proteomics,2013,13(12-13):1934-1946. [30] NGUYEN T H,BRECHENMACHER L,ALDRICH J T,et al.Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum[J]. Molecular & cellular proteomics,2012,11(11):1140-1155. [31] ZHU J K.Abiotic stress signaling and responses in plants[J]. Cell,2016,167(2):313-324. [32] JI L,ZHOU P,ZHU Y,et al.Proteomic analysis of rice seedlings under cold stress[J]. The protein journal,2017,36(4):299-307. [33] GHATAK A,CHATURVEDI P,NAGLER M,et al.Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet)[J].Journal of proteomics,2016,143:122-135. [34] PAUL S,GAYEN D,DATTA S K,et al.Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress[J]. Plant science:An international journal of experimental plant biology,2015,234:133-143. [35] BIEHLER K,FOCK H.Evidence for the contribution of the mehler-peroxidase reaction in dissipating excess electrons in drought-stressed wheat[J]. Plant physiology,1996,112(1):265-272. [36] TAMBURINO R,VITALE M, RUGGIERO A,et al.Chloroplast proteome response to drought stress and recovery in tomato (Solanum lycopersicum L.)[J]. BMC plant biology,2017,17(1):40. [37] DALCORSO G,MANARA A,FURINI A.An overview of heavy metal challenge in plants:From roots to shoots[J]. Metallomics:Integrated biometal science,2013,5(9):1117-1132. [38] D'ALESSANDRO A,TAAMALLI M,GEVI F,et al. Cadmium stress responses in Brassica juncea:Hints from proteomics and metabolomics[J]. Journal of proteome research,2013,12(11):4979-4997. [39] XU L,WANG Y,ZHANG F,et al.Dissecting root proteome changes reveals new insight into cadmium stress response in radish (Raphanus sativus L.)[J]. Plant & cell physiology,2017,58(11):1901-1913. [40] DU H,LIANG H H,JIANG Y,et al.Proteome responses of Gracilaria lemaneiformis exposed to lead stress[J].Marine pollution bulletin,2018,135:311-317. [41] BARKLA B J,VERA-ESTRELLA R,MIRANDA-VERGARA M C,et al. Quantitative proteomics of heavy metal exposure in Arabidopsis thaliana reveals alterations in one-carbon metabolism enzymes upon exposure to zinc[J]. Journal of proteomics,2014,111:128-138. [42] BAIG M A,AHMAD J,BAGHERI R,et al.Proteomic and ecophysiological responses of soybean (Glycine max L.) root nodules to Pb and Hg stress[J]. BMC plant biology,2018,18(1):283. [43] NAMBU M,TATSUKAMI Y,MORISAKA H,et al.Quantitative time-course proteome analysis of Mesorhizobium loti during nodule maturation[J]. Journal of proteomics,2015,125:112-120. [44] MARONDEDZE C.Date fruit proteomics during development and ripening stages[J]. Methods in molecular biology,2017,1638:381-398. [45] SHAH M,TEIXEIRA F M,SOARES E L,et al.Time-course proteome analysis of developing extrafloral nectaries of Ricinus communis[J]. Proteomics,2016,16(4):629-633. |