湖北农业科学 ›› 2025, Vol. 64 ›› Issue (4): 24-30.doi: 10.14088/j.cnki.issn0439-8114.2025.04.005

• 药用植物 • 上一篇    下一篇

基于ImageJ的药用植物黄精染色体核型分析

游磊1, 朱哲慧1, 石宪铭1, 张泽志2, 郑兰兰1, 张勇洪1   

  1. 1.湖北医药学院, a.基础医学院; b.生物医药研究院/武当特色中药研究湖北省重点实验室/药用植物及进化遗传学十堰市重点实验室,湖北 十堰 442000;
    2.十堰市农业科学院,湖北 十堰 442000
  • 收稿日期:2024-10-01 出版日期:2025-04-25 发布日期:2025-05-12
  • 通讯作者: 张勇洪(1986-),男,湖北襄阳人,教授,主要从事药用植物干细胞分化与再生机制研究,(电话)0719-8891147(电子信箱)zhangyh@hbmu.edu.cn。
  • 作者简介:游磊(1989-),男,湖北潜江人,副教授,主要从事药用植物学与表观遗传药理学研究,(电话)0719-8891147(电子信箱)youlei@hbmu.edu.cn。
  • 基金资助:
    国家自然科学基金项目(32000609; 32200680); 湖北医药学院PI项目(HBMUPI202104); 湖北省科技计划项目(2022BCE035); 十堰市科技研发重点项目(2021K20)

Karyotype analysis of medicinal plant Polygonatum sibiricum based on ImageJ

YOU Lei1, ZHU Zhe-hui1, SHI Xian-ming1, ZHANG Ze-zhi2, ZHENG Lan-lan1, ZHANG Yong-hong1   

  1. 1a. School of Basic Medical Sciences; 1b. Institute of Biomedicine/Hubei Key Laboratory of Wudang Local Chinese Medicine Research/Shiyan Key Laboratory of Medicinal Plants and Evolutionary Genetics,Hubei University of Medicine,Shiyan 442000, Hubei, China;
    2. Shiyan Academy of Agricultural Sciences, Shiyan 442000, Hubei, China
  • Received:2024-10-01 Published:2025-04-25 Online:2025-05-12

摘要: 以药用植物黄精(Polygonatum sibiricum)为例,建立基于开源的图像处理软件ImageJ的植物染色体核型分析方法和工作流程。打开ImageJ软件并加载Stowers插件包和LEVAN插件,将已获取的黄精中期染色体显微图像经过图片预处理、染色体轮廓选定、染色体轮廓分割及去杂、染色体裁切等步骤后,获取染色体形态数据。使用Photoshop软件进行核型图排布,使用Excel软件绘制核型模式图。结果表明,依据Levan核型分类标准,黄精染色体核型公式为2n=24=4m+10sm+10st,核型不对称系数为72.11%,核型属于3B型。该方法提出了针对核型图像中染色体接触或重叠的解决策略,具有开源免费、操作流程清晰、交互准确的优点。

关键词: 黄精(Polygonatum sibiricum), ImageJ, 药用植物, 染色体, 核型分析

Abstract: Using the medicinal plant Polygonatum sibiricum as an example, a karyotype analysis method and workflow for plant chromosomes was established based on the open-source image processing software ImageJ. The ImageJ software was opened, and the Stowers plugin package and LEVAN plugin were loaded. The acquired microscopic images of Polygonatum sibiricum metaphase chromosomes were processed through image preprocessing, chromosome contour selection, chromosome segmentation and debris removal, and chromosome cropping to obtain chromosome morphological data. Photoshop software was used for karyotype arrangement, and Excel software was used to draw the karyotype ideogram. The results showed that, according to Levan’s karyotype classification standard, the karyotype formula of Polygonatum sibiricum was 2n = 24 = 4m + 10sm + 10st, with an asymmetry index of 72.11%, belonging to the 3B type. This method proposed a solution strategy for chromosome contact or overlap in karyotype images, with the advantages of being open-source, free, having a clear operational workflow, and providing accurate interaction.

Key words: Polygonatum sibiricum, ImageJ, medicinal plants, chromosomes, karyotype analysis

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